Vivek Kapur, BVSc, Ph.D.

Comparative performance and age dependence of tuberculin and defined antigen bovine tuberculosis skin tests assessed with Bayesian latent class analysis
Scientific Reports, Lakew, Matios, Conlan, Andrew J.K., Tadesse, Biniam, Srinivasan, Sreenidhi, Yalew, Bekele, Benti, Teferi, Olani, Abebe, Kinfe, Getachew, Ashagrie, Tigist, Abebe, Ashebir, Fromsa, Abebe, Abdela, Musse Girma, Bayissa, Berecha, Gebre, Solomon, Mihret, Adane, Mekonnen, Getnet Abie, Ameni, Gobena, Ashenafi, Hagos, Wood, James L.N., Gumi, Balako, Kapur, Vivek, 2025

Draft genome sequences of six Brucella melitensis isolates collected from humans and livestock in Tanzania
Genome Announcements, Middlebrook, Earl A., Hugho, Ephrasia, Lyimo, Beatus, Mathew, Coletha, Mayenga, Charles, Li, Lingling, Amani, Nelson B., Lukambagire, Abdul Hamid, Kumburu, Happiness, Munuo, Lidia, Lyimo, Samson, Shirima, Gabriel, Kazwala, Rudovick R., Byukusenge, Maurice, Mmbaga, Blandina, Makondo, Zachariah, Kapur, Vivek, Buza, Joram, Fair, Jeanne M., Katani, Robab, 2025

Latent class analysis identifies risk groups to model the expected benefits of SARS-CoV-2 interventions among university students
Scientific Reports, Arnold CRK, None, Bharti, N, Exten, C, Small, M, Srinivasan, S, Kuchipudi, S, Kapur, Vivek, Ferrari, M, 2025

Comparative performance of tuberculin and defined-antigen cocktails for detecting bovine tuberculosis in BCG-vaccinated cattle in natural settings
Scientific Reports, Fromsa, Abebe, Conlan, Andrew J.K., Srinivasan, Sreenidhi, Gumi, Balako, Bedada, Wegene, Zeleke, Miserach, Worku, Dawit, Lakew, Matios, Tadesse, Biniam, Bayissa, Berecha, Sirak, Asegedech, Abdela, Musse Girma, Mekonnen, Getnet Abie, Chibssa, Tesfaye, Veerasami, Maroudam, Jones, Gareth J., Vordermeier, H. Martin, Juleff, Nick, Wood, James L.N., Ameni, Gobena, Kapur, Vivek, 2025

Recovery of Mycobacterium tuberculosis Complex Isolates Including Pre–Extensively Drug-Resistant Strains From Cattle at a Slaughterhouse in Chennai, India
Open Forum Infectious Diseases, Ramanujam, Harini, Refaya, Ahmed Kabir, Thiruvengadam, Kannan, Pazhanivel, Natesan, Kandasamy, Devika, Shanmugavel, Ashokkumar, Radhakrishnan, Ammayappan, Radhika, Golla, Ravi, Rajkumar, Ravi, Neelakandan, Palanisamy, Maheswaran, Shanmugam, Sivakumar, Stuber, Tod P., Kapur, Vivek, Palaniyandi, Kannan, 2025

Early calf segregation enables development of bovine tuberculosis-free replacement stock in a highly infected dairy herd: a preliminary study in Ethiopia
Frontiers in Veterinary Science, Lakew, M, Tadesse, B, Bedada, W, Wakjira, B, Mekonnen, G, Chibssa, T, Ashenafi, H, Ameni, G, Conlan AJK, None, Bakker, D, Gumi, B, Kapur, Vivek, 2025

Comparative pathogenesis of Ethiopia/Habru/2014 Lineage-IV peste des petits ruminants virus in goats and cattle
BMC Veterinary Research, Aklilu, Fasil, Ashenafi, Hagos, Kassa, Tesfu, Chaka, Hassen, Sibhatu, Demeke, Shegu, Dereje, Mohammed, Abde Aliy, Belaineh, Redeat, Kidane, Menbere, Asgedom, Hagos, Chibssa, Tesfaye, Mekonnen, Getnet, Sirak, Asegedetch, Gebredufe, Solomon, Schulz, Claudia, Herzog, Catherine M., Kapur, Vivek, 2024

Bovine tuberculosis in Central Ethiopian slaughterhouses and the identification of causative mycobacteria by multiplex real-time PCR
BMC Microbiology, Fromsa, Abebe, Conlan, Andrew J.K., Srinivasan, Sreenidhi, Zeleke, Miserach, Worku, Dawit, Lakew, Matios, Abdela, Musse Girma, Bahiru, Getahun, Wood, James L.N., Bakker, Douwe, Gumi, Balako, Ameni, Gobena, Kapur, Vivek, 2024

Temporal dynamics of the early immune response following Mycobacterium bovis infection of cattle
Scientific Reports, Holder, Thomas, Srinivasan, Sreenidhi, McGoldrick, Adrian, Williams, Gareth A., Palmer, Simonette, Clarke, John, O’Brien, Amanda, Conlan, Andrew J.K., Juleff, Nick, Vordermeier, H. Martin, Jones, Gareth J., Kapur, Vivek, 2024

Comparative analysis of tuberculin and defined antigen skin tests for detection of bovine tuberculosis in buffaloes (Bubalus bubalis) in Haryana state, India
BMC Veterinary Research, Kumar, Mohit, Kumar, Tarun, Jangir, Babu Lal, Singh, Mahavir, Arora, Devan, Bangar, Yogesh, Conlan, Andrew, Vordermeier, Martin, Bakker, Douwe, Byregowda, S. M., Srinivasan, Sreenidhi, Kapur, Vivek, Jindal, Naresh, 2024

Assessing the feasibility of test-and-cull and test-and-segregation approaches for the control of high-prevalence bovine tuberculosis in Ethiopian intensive dairy farms
Scientific Reports, Lakew, Matios, Tadesse, Biniam, Srinivasan, Sreenidhi, Aschalew, Muluken, Andarge, Bekele, Kebede, Dirshaye, Etifu, Addisu, Alemu, Tena, Yalew, Bekele, Benti, Teferi, Olani, Abebe, Abera, Shubisa, Bedada, Wegene, Fromsa, Abebe, Mekonnen, Getnet Abie, Almaw, Gizat, Ameni, Gobena, Ashenafi, Hagos, Gumi, Balako, Bakker, Douwe, Kapur, Vivek, 2024

Empirical and model-based evidence for a negligible role of cattle in peste des petits ruminants virus transmission and eradication
Communications Biology, Hudson, Peter, Herzog, Catherine M., Aklilu, Fasil, Sibhatu, Demeke, Shegu, Dereje, Belaineh, Redeat, Mohammed, Abde Aliy, Kidane, Menbere, Schulz, Claudia, Willett, Brian J., Cleaveland, Sarah, Bailey, Dalan, Peters, Andrew R., Cattadori, Isabella M., Asgedom, Hagos, Buza, Joram, Forza, Mesfin Sahle, Chibssa, Tesfaye Rufael, Gebre, Solomon, Juleff, Nick, Bjørnstad, Ottar N., Baron, Michael D., Kapur, Vivek, 2024

Zoonotic tuberculosis in the 21st century
The Lancet Infectious Diseases, Duffy, S, Marais, B, Kapur, Vivek, Behr, M, 2024

BCG vaccination reduces bovine tuberculosis transmission, improving prospects for elimination
Science, Fromsa, Abebe, Willgert, Katriina, Srinivasan, Sreenidhi, Mekonnen, Getnet, Bedada, Wegene, Gumi, Balako, Lakew, Matios, Tadesse, Biniam, Bayissa, Berecha, Sirak, Asegedech, Abdela, Musse Girma, Gebre, Solomon, Chibssa, Tesfaye, Veerasami, Maroudam, Vordermeier, H. Martin, Bakker, Douwe, Berg, Stefan, Ameni, Gobena, Juleff, Nick, de Jong, Mart C.M., Wood, James, Conlan, Andrew, Kapur, Vivek, 2024

Molecular detection and characterization of the Mycobacterium tuberculosis complex subspecies responsible for bovine tuberculosis in Punjab, Pakistan
Microbiology spectrum, Maqsood, Rubab, Duffy, Shannon C., Rashid, Hamad Bin, Gill, Shakera Sadiq, Jabeen, Chanda, Arshad, Nimra, Umbreen, Gulshan, Behr, Marcel A., Kapur, Vivek, Chaudhry, Mamoona, 2024

An imputed ancestral reference genome for the Mycobacterium tuberculosis complex better captures structural genomic diversity for reference-based alignment workflows
Microbial genomics, Harrison, Luke B., Kapur, Vivek, Behr, Marcel A., 2024

Seroprevalence and risk factors for brucellosis amongst livestock and humans in a multi-herd ranch system in Kagera, Tanzania
Frontiers in Public Health, Hudson, Peter, Lyimo, Beatus, Hugho, Ephrasia, Mathew, Coletha, Mayenga, Charles, Lukambagire, Abdul Hamid, Lyimo, Samson, Munuo, Lidia, Byukusenge, Maurice, Withall, Jodie, Ashford, Roland T., Mmbaga, Blandina T., Makondo, Zachariah, McGiven, John, Radzio-Basu, Jessica, Ganda, Erika, Middlebrook, Earl A., Bartlow, Andrew W., Fair, Jeanne M., Shirima, Gabriel, Sriranganathan, Nammalwar, Kazwala, Rudovick R., Cattadori, Isabella M., Kapur, Vivek, Buza, Joram J., Katani, Robab, 2024

SARS-COV-2 Omicron variants conformationally escape a rare quaternary antibody binding mode
Communications Biology, Goike, Jule, Hsieh, Ching Lin, Horton, Andrew P., Gardner, Elizabeth C., Zhou, Ling, Bartzoka, Foteini, Wang, Nianshuang, Javanmardi, Kamyab, Herbert, Andrew, Abbassi, Shawn, Xie, Xuping, Xia, Hongjie, Shi, Pei Yong, Renberg, Rebecca, Segall-Shapiro, Thomas H., Terrace, Cynthia I., Wu, Wesley, Shroff, Raghav, Byrom, Michelle, Ellington, Andrew D., Marcotte, Edward M., Musser, James M., Kuchipudi, Suresh V., Kapur, Vivek, Georgiou, George, Weaver, Scott C., Dye, John M., Boutz, Daniel R., McLellan, Jason S., Gollihar, Jimmy D., 2023

Complete genome of a 2014 isolate of peste des petits ruminants virus from Ethiopia
Genome Announcements, King, Simon, Baron, Michael D., Kidane, Menbere, Aklilu, Fasil, Kapur, Vivek, Herzog, Catherine M., Batten, Carrie, 2023

Clinical features of human tuberculosis due to Mycobacterium orygis in Southern India
Journal of Clinical Tuberculosis and Other Mycobacterial Diseases, Sumanth, Lydia Jennifer, Suresh, Christina Rachel, Venkatesan, Manigandan, Manesh, Abi, Behr, Marcel A., Kapur, Vivek, Michael, Joy Sarojini, 2023

Emergence of Mycobacterium orygis-Associated Tuberculosis in Wild Ruminants, India
Emerging Infectious Diseases, Sharma, Megha, Mathesh, Karikalan, Dandapat, Premanshu, Mariappan, Asok Kumar, Kumar, Ravi, Kumari, Soni, Kapur, Vivek, Maan, Sushila, Jindal, Naresh, Bansal, Nitish, Kadiwar, Riyaz, Kumar, Abhishek, Gupta, Nitin, Pawde, A. M., Sharma, A. K., 2023

Is bovine density and ownership associated with human tuberculosis in India?
PLoS One, Willgert, Katriina, da Silva, Susie, Li, Ruoran, Dandapat, Premanshu, Veerasami, Maroudam, Maity, Hindol, Papanna, Mohan, Srinivasan, Sreenidhi, Wood, James L.N., Kapur, Vivek, Conlan, Andrew J.K., 2023

Is Pre-Exposure Prophylaxis a Cost-Effective Intervention to Avert Rabies Deaths among School-Aged Children in India? Comment on Royal et al. A Cost-Effectiveness Analysis of Pre-Exposure Prophylaxis to Avert Rabies Deaths in School-Aged Children in India. Vaccines 2023, 11, 88
Vaccines, Kapur, Vivek, 2023

Editorial: Advancing the development and implementation of regional, national tuberculosis control programs in livestock in Africa, Asia, and Latin America
Frontiers in Veterinary Science, Bakker, Douwe, Buza, Joram Josephat, Álvarez, Julio, Kapur, Vivek, 2023

Transmission of SARS-CoV-2 from humans to animals and potential host adaptation
Nature Communications, Tan, Cedric C.S., Lam, Su Datt, Richard, Damien, Owen, Christopher J., Berchtold, Dorothea, Orengo, Christine, Nair, Meera Surendran, Kuchipudi, Suresh V., Kapur, Vivek, van Dorp, Lucy, Balloux, François, 2022

Prevalence of Newcastle Disease Virus in Wild and Migratory Birds in Haryana, India
Avian Diseases, Bansal, Nitish, Singh, Renu, Chaudhary, Deepika, Mahajan, Nand K., Joshi, Vinay G., Maan, Sushila, Ravishankar, Chintu, Sahoo, Niranjana, Mor, Sunil K., Radzio-Basu, Jessica, Kapur, Vivek, Jindal, Naresh, Goyal, Sagar M., 2022

Detection of Newcastle disease virus and assessment of associated relative risk in backyard and commercial poultry in Kerala, India
Veterinary Medicine and Science, Ravishankar, Chintu, Ravindran, Rajasekhar, John, Anneth Alice, Divakar, Nithin, Chandy, George, Joshi, Vinay, Chaudhary, Deepika, Bansal, Nitish, Singh, Renu, Sahoo, Niranjana, Mor, Sunil K., Mahajan, Nand K., Maan, Sushila, Jindal, Naresh, Schilling, Megan A., Herzog, Catherine M., Basu, Saurabh, Radzio-Basu, Jessica, Kapur, Vivek, Goyal, Sagar M., 2022

Defined Antigen Skin Test for Bovine Tuberculosis Retains Specificity on Revaccination With Bacillus Calmette–Guérin
Frontiers in Veterinary Science, Subramanian, Saraswathi, Srinivasan, Sreenidhi, Ramaiyan Selvaraju, Kathiravan, Vinoli, Priyadharshini Michael, Selladurai, Suganya, Ramasamy, Boominathan, Kumaragurubaran, Karthik, Bakker, Douwe, Vordermeier, Martin, Kapur, Vivek, Gopal, Dhinakar Raj, 2022

Immunological Evaluation of Goats Immunized with a Commercial Vaccine against Johne’s Disease
Vaccines, Bannantine, John P., Stabel, Judith R., Kapur, Vivek, 2022

Utility of the Intradermal Skin Test in a Test-and-Cull Approach to Control Bovine Tuberculosis: A Pilot Study in Ethiopia
Frontiers in Veterinary Science, Lakew, Matios, Srinivasan, Sreenidhi, Mesele, Beruhtesfa, Olani, Abebe, Koran, Tafesse, Tadesse, Biniam, Mekonnen, Getnet Abie, Almaw, Gizat, Sahlu, Temertu, Seyoum, Bekele, Beyecha, Kebede, Gumi, Balako, Ameni, Gobena, Ashenafi, Hagos, Bakker, Douwe, Kapur, Vivek, Gebre, Solomon, 2022

Multiple spillovers from humans and onward transmission of SARS-CoV-2 in white-tailed deer
Proceedings of the National Academy of Sciences of the United States of America, Kuchipudi, Suresh V., Surendran-Nair, Meera, Ruden, R, Yon, M, Nissly, R, Vandegrift, Kurt J., Nelli, R, Li, Lingling, Jayarao, Bhushan, Maranas, Costas D., Levine, N, Willgert, K, Conlan, Andrew J.K., Conlan AJK, None, Olsen, R, Davis, J, Musser, J, Hudson, Peter John, Kapur, Vivek, 2022

Prevalence of Newcastle disease and associated risk factors in domestic chickens in the Indian state of Odisha
PLoS One, Sahoo, Niranjana, Bhuyan, Kashyap, Panda, Biswaranjan, Behura, Nrushingha Charan, Biswal, Sangram, Samal, Lipismita, Chaudhary, Deepika, Bansal, Nitish, Singh, Renu, Joshi, Vinay G., Jindal, Naresh, Mahajan, Nand K., Maan, Sushila, Ravishankar, Chintu, Rajasekhar, Ravindran, Radzio-Basu, Jessica, Herzog, Catherine M., Kapur, Vivek, Mor, Sunil K., Goyal, Sagar M., 2022

SARS-CoV-2 Omicron (B.1.1.529) Infection of Wild White-Tailed Deer in New York City
Viruses, Vandegrift, Kurt, Yon, Michele, Surendran Nair, Meera, None, Surendran Nair, M, Gontu, Abhinay, Ramasamy, Santhamani, Amirthalingam, Saranya, Neerukonda, Sabarinath, Nissly, Ruth, Chothe, Shubhada, Jakka, Padmaja, LaBella, Lindsey, Levine, Nicole, Rodriguez, Sophie, Chen, C, Sheersh Boorla, Veda, None, Sheersh Boorla, V, Stuber, Tod, Boulanger, Jason, Kotschwar, Nathan, Aucoin, Sarah, Simon, Richard, Toal, Katrina, Olsen, Randall, Davis, J, Bold, Dashzeveg, Gaudreault, Natasha, Dinali Perera, Krishani, None, Dinali Perera, K, Kim, Yunjeong, Chang, Kyeong-Ok, Maranas, Costas, Richt, Juergen, Musser, James, Hudson, P, Kapur, Vivek, Kuchipudi, Suresh V., 2022

Transmission history of SARS-CoV-2 in humans and white-tailed deer
Scientific Reports, Willgert, Katriina, Didelot, X, Surendran-Nair, Meera, Kuchipudi, Suresh V., Ruden, R, Yon, M, Nissly, R, Vandegrift, Kurt J., Nelli, R, Li, L, Jayarao, Bhushan M., Levine, N, Olsen, R, Davis, J, Musser, J, Hudson, P, Kapur, Vivek, Conlan AJK, None, Conlan, Andrew J.K., 2022

Development and Validation of Indirect Enzyme-Linked Immunosorbent Assays for Detecting Antibodies to SARS-CoV-2 in Cattle, Swine, and Chicken
Viruses, Vandegrift, Kurt, Gontu, Abhinay, Marlin, Erika, Ramasamy, Santhamani, Neerukonda, Sabarinath, Anil, Gayatri, Morgan, Jasmine, Quraishi, Meysoon, Chen, C, Boorla, Veda, Nissly, Ruth, Jakka, Padmaja, Chothe, Shubhada, Ravichandran, Abirami, Kodali, Nishitha, Amirthalingam, Saranya, LaBella, Lindsey, Kelly, Kathleen, Natesan, Pazhanivel, Minns, Allen, Rossi, Randall, Werner, Jacob R., Hovingh, Ernest, Lindner, Scott E., Tewari, Deepanker, Kapur, Vivek, Vandegrift, K, Maranas, Costas, Nair, Meera, Surendran Nair, M, Kuchipudi, Suresh V., Kuchipudi, Suresh, V, None, 2022

A longitudinal study of the impact of university student return to campus on the SARS-CoV-2 seroprevalence among the community members
Scientific Reports, Arnold, Callum R.K., Srinivasan, Sreenidhi, Rodriguez, Sophie, Rydzak, Natalie, Herzog, Catherine M., Gontu, Abhinay, Bharti, Nita, Small, Meg, Rogers, Connie J., Schade, Margeaux M., Kuchipudi, Suresh V., Kapur, Vivek, Read, Andrew F., Ferrari, Matthew J., 2022

Temporal dynamics of intradermal cytokine response to tuberculin in Mycobacterium bovis BCG-vaccinated cattle using sampling microneedles
Scientific Reports, Steinbach, Sabine, Jalili-Firoozinezhad, Sasan, Srinivasan, Sreenidhi, Melo, Mariane B., Middleton, Sonya, Konold, Timm, Coad, Michael, Hammond, Paula T., Irvine, Darrell J., Vordermeier, Martin, Kapur, Vivek, 2021

Identification of Bacillus anthracis, Brucella spp., and Coxiella burnetii DNA signatures from bushmeat
Scientific Reports, Katani, Robab, Schilling, Megan A., Lyimo, Beatus, Eblate, Ernest, Martin, Andimile, Tonui, Triza, Cattadori, Isabella M., Francesconi, Stephen C., Estes, Anna Bond, Rentsch, Dennis, Srinivasan, Sreenidhi, Lyimo, Samson, Munuo, Lidia, Tiambo, Christian K., Stomeo, Francesca, Gwakisa, Paul, Mosha, Fausta, Hudson, Peter John, Buza, Joram J., Kapur, Vivek, 2021

Prevalence of Newcastle Disease Virus in Commercial and Backyard Poultry in Haryana, India
Frontiers in Veterinary Science, Joshi, Vinay G., Chaudhary, Deepika, Bansal, Nitish, Singh, Renu, Maan, Sushila, Mahajan, Nand K., Ravishankar, Chintu, Sahoo, Niranjana, Mor, Sunil K., Radzio-Basu, Jessica, Herzog, Catherine M., Kapur, Vivek, Goel, Parveen, Jindal, Naresh, Goyal, Sagar M., 2021

Development of a multiplex real-time pcr assay for mycobacterium bovis bcg and validation in a clinical laboratory
Microbiology spectrum, Duffy, Shannon C., Venkatesan, Manigandan, Chothe, Shubhada, Poojary, Indira, Verghese, Valsan Philip, Kapur, Vivek, Behr, Marcel A., Michael, Joy Sarojini, 2021

Monoclonal antibodies to s and n sars-cov-2 proteins as probes to assess structural and antigenic properties of coronaviruses
Viruses, Kumar, R, Christensen, Neil D., Kaddis Maldonado, R, Bewley, Maria C., Ostman, A, Sudol, M, Chen, E, Buchkovich, N, Gontu, A, Surendran Nair, Meera, Nissly, R, Minns, A, Kapur, Vivek, Rossi, R, Kuchipudi, Suresh V., Lindner, Scott E., Parent, Leslie J., Flanagan, John M., Buchkovich, Nicholas J., 2021

A Defined Antigen Skin Test for Diagnosis of Bovine Tuberculosis in Domestic Water Buffaloes (Bubalus bubalis)
Frontiers in Veterinary Science, Kumar, Tarun, Singh, Mahavir, Jangir, Babu Lal, Arora, Devan, Srinivasan, Sreenidhi, Bidhan, Devender, Yadav, Dipin Chander, Veerasami, Maroudam, Bakker, Douwe, Kapur, Vivek, Jindal, Naresh, 2021

Erratum: Bovine tuberculosis prevalence and risk factors in selected districts of Bangladesh (PLoS ONE (2020) 15:11 (e0241717) DOI: 10.1371/journal.pone.0241717)
PLoS One, Islam, S. K.Shaheenur, Rumi, Tanzida Begum, Kabir, S. M.Lutful, Van Der Zanden, Adri G.M., Kapur, Vivek, Rahman, A. K.M.Anisur, Ward, Michael P., Bakker, Douwe, Ross, Allen G., Rahim, Zeaur, 2021

Corrigendum: A Meta-Analysis of the Effect of Bacillus Calmette-Guérin Vaccination Against Bovine Tuberculosis: Is Perfect the Enemy of Good? (Frontiers in Veterinary Science, (2021), 8, (637580), 10.3389/fvets.2021.637580)
Frontiers in Veterinary Science, Srinivasan, Sreenidhi, Conlan, Andrew J.K., Easterling, Laurel A., Herrera, Christian, Dandapat, Premanshu, Veerasami, Maroudam, Ameni, Gobena, Jindal, Naresh, Raj, Gopal Dhinakar, Wood, James, Juleff, Nick, Bakker, Douwe, Vordermeier, Martin, Kapur, Vivek, 2021

Strain and host-cell dependent role of type-1 fimbriae in the adherence phenotype of super-shed Escherichia coli O157:H7
International Journal of Medical Microbiology, Katani, Robab, Kudva, Indira T., Srinivasan, Sreenidhi, Stasko, Judith B., Schilling, Megan, Li, Lingling, Cote, Rebecca, DebRoy, Chitrita, Arthur, Terrance M., Sokurenko, Evgeni V., Kapur, Vivek, 2021

Neutralizing Aptamers Block S/RBD-ACE2 Interactions and Prevent Host Cell Infection
Angewandte Chemie - International Edition, Liu, Xiaohui, Wang, Yi ling, Wu, Jacky, Qi, Jianjun, Zeng, Zihua, Wan, Quanyuan, Chen, Zhenghu, Manandhar, Pragya, Cavener, Victoria S., Boyle, Nina R., Fu, Xinping, Salazar, Eric, Kuchipudi, Suresh V., Kapur, Vivek, Zhang, Xiaoliu, Umetani, Michihisa, Sen, Mehmet, Willson, Richard C., Chen, Shu hsia, Zu, Youli, 2021

Synthetic repertoires derived from convalescent COVID-19 patients enable discovery of SARS-CoV-2 neutralizing antibodies and a novel quaternary binding modality.
bioRxiv : the preprint server for biology, Goike, J, Hsieh, C, Horton, A, Gardner, E, Bartzoka, F, Wang, N, Javanmardi, K, Herbert, A, Abbassi, S, Renberg, R, Johanson, M, Cardona, J, Segall-Shapiro, T, Zhou, L, Nissly, R, Gontu, A, Byrom, M, Maranhao, A, Battenhouse, A, Gejji, V, Soto-Sierra, L, Foster, E, Woodard, S, Nikolov, Z, Lavinder, J, Voss, W, Annapareddy, A, Ippolito, G, Ellington, A, Marcotte, E, Finkelstein, I, Hughes, R, Musser, J, Kuchipudi, S, Kapur, Vivek, Georgiou, G, Dye, J, Boutz, D, McLellan, J, Gollihar, J, 2021

A Meta-Analysis of the Effect of Bacillus Calmette-Guérin Vaccination Against Bovine Tuberculosis: Is Perfect the Enemy of Good?
Frontiers in Veterinary Science, Srinivasan, Sreenidhi, Conlan, Andrew J.K., Easterling, Laurel A., Herrera, Christian, Dandapat, Premanshu, Veerasami, Maroudam, Ameni, Gobena, Jindal, Naresh, Raj, Gopal Dhinakar, Wood, James, Juleff, Nick, Bakker, Douwe, Vordermeier, Martin, Kapur, Vivek, 2021

Complete genome sequence of mycobacterium orygis strain 51145
Genome Announcements, Rufai, Syed Beenish, McIntosh, Fiona, Poojary, Indira, Chothe, Shubhada, Sebastian, Aswathy, Albert, Istvan, Praul, Craig, Venkatesan, Manigandan, Mahata, Gibarni, Maity, Hindol, Dandapat, Premanshu, Michael, Joy Sarojini, Katani, Robab, Kapur, Vivek, Behr, Marcel A., 2021

SARS-CoV-2 Seroprevalence in a University Community: A Longitudinal Study of the Impact of Student Return to Campus on Infection Risk Among Community Members.
medRxiv, Arnold, Callum, Srinivasan, Sreenidhi, Herzog, Catherine, Gontu, Abhinay, Bharti, N, Small, Meg, Rogers, Connie, Schade, Margeaux, Kuchipudi, S, Kapur, V, Read, A, Ferrari, M, 2021

Nonfimbrial Adhesin Mutants Reveal Divergent Escherichia coli O157:H7 Adherence Mechanisms on Human and Cattle Epithelial Cells
International Journal of Microbiology, Moreau, Matthew R., Kudva, Indira T., Katani, Robab, Cote, Rebecca, Li, Lingling, Arthur, Terrance M., Kapur, Vivek, 2021

Limited window for donation of convalescent plasma with high live-virus neutralizing antibody titers for COVID-19 immunotherapy
Communications Biology, Gontu, Abhinay, Srinivasan, Sreenidhi, Salazar, Eric, Nair, Meera Surendran, Nissly, Ruth, Greenawalt, Denver, Bird, Ian, Herzog, Catherine, Ferrari, Matthew J., Poojary, Indira, others, None, Katani, Robab, Lindner, Scott E., Minns, Allen M., Rossi, Randall, Christensen, Paul A., Castillo, Brian, Chen, Jian, Eagar, Todd N., Yi, Xin, Zhao, Picheng, Leveque, Christopher, Olsen, Randall J., Bernard, David W., Gollihar, Jimmy, Kuchipudi, Suresh V., Musser, James M., Kapur, Vivek, 2021

Multiple spillovers and onward transmission of SARS-CoV-2 in free-living and captive white-tailed deer
bioRxiv, Kuchipudi, S, Surendran-Nair, Meera, Ruden, Rachel, Yon, Michelle, Nissly, Ruth, Nelli, Rahul, Li, L, Jayarao, B, Vandegrift, K, Maranas, C, Levine, Nicole, Willgert, Katriina, Conlan, Andrew, Olsen, Randall, Davis, James, Musser, James, Hudson, P, Kapur, Vivek, 2021

Bovine tuberculosis prevalence and risk factors in selected districts of Bangladesh
PLoS One, Islam, S. K.Shaheenur, Rumi, Tanzida Begum, Kabir, S. M.Lutful, van der Zanden, Adri G.M., Kapur, Vivek, Rahman, A. K.M.Anisur, Ward, Michael P., Bakker, Douwe, Ross, Allen G., Rahim, Zeaur, 2020

Mycobacterium orygis: a zoonosis, zooanthroponosis, or both? – Authors' reply
The Lancet Microbe, Duffy, Shannon C., Srinivasan, Sreenidhi, Michael, Joy S., Behr, Marcel A., Kapur, Vivek, 2020

Paratuberculosis: Organism, Disease, Control, Kapur, Vivek, 2020

Proteins and antigens of Mycobacterium avian subs. paratuberculosis, Bannantine, John, Kapur, Vivek, 2020

Identifying age cohorts responsible for peste des petits ruminants virus transmission among sheep, goats, and cattle in northern Tanzania
Viruses, Herzog, C., de Glanville, W., Willett, B., Cattadori, I. M., Kapur, V., Hudson, Peter, Buza, J., Swai, E., Cleaveland, S., Bjørnstad, O. N., Bjornstad, O, 2020

A Defined Antigen Skin Test That Enables Implementation of BCG Vaccination for Control of Bovine Tuberculosis: Proof of Concept
Frontiers in Veterinary Science, Srinivasan, Sreenidhi, Subramanian, Saraswathi, Shankar Balakrishnan, Sai, Ramaiyan Selvaraju, Kathiravan, Manomohan, Vandana, Selladurai, Suganya, Jothivelu, Monika, Kandasamy, Srinivasan, Gopal, Dhinakar Raj, Kathaperumal, Kumanan, Conlan, Andrew J.K., Veerasami, Maroudam, Bakker, Douwe, Vordermeier, Martin, Kapur, Vivek, 2020

Molecular species identification of bushmeat recovered from the Serengeti ecosystem in Tanzania
PLoS One, Schilling, Megan, Estes, Anna, Eblate, Ernest, Martin, Andimile, Rentsch, Dennis, Katani, Robab, Joseph, Asteria, Kindoro, Fatuma, Lyimo, Beatus, Radzio-Basu, Jessica, Cattadori, Isabella, Hudson, Peter, Kapur, Vivek, Buza, Joram, Gwakisa, Paul, 2020

Reconsidering Mycobacterium bovis as a proxy for zoonotic tuberculosis: a molecular epidemiological surveillance study
The Lancet Microbe, Duffy, Shannon C., Srinivasan, Sreenidhi, Schilling, Megan A., Stuber, Tod, Danchuk, Sarah N., Michael, Joy S., Venkatesan, Manigandan, Bansal, Nitish, Maan, Sushila, Jindal, Naresh, Chaudhary, Deepika, Dandapat, Premanshu, Katani, Robab, Chothe, Shubhada, Veerasami, Maroudam, Robbe-Austerman, Suelee, Juleff, Nicholas, Kapur, Vivek, Behr, Marcel A., 2020

Relationship between Anti-Spike Protein Antibody Titers and SARS-CoV-2 In Vitro Virus Neutralization in Convalescent Plasma.
bioRxiv, Salazar, E., Kuchipudi, Suresh, Christensen, P., Eagar, T., Yi, X., Zhao, P., Jin, Z., Long, S., Olsen, R., Chen, J., Castillo, B., Leveque, C., Towers, D., Lavinder, J., Gollihar, J., Cardona, J., Ippolito, G., Nissly, R., Bird, I., Greenawalt, D., Rossi, R., Gontu, A., Srinivasan, S., Poojary, I., Cattadori, Isabella, Hudson, P, Joselyn, N., Prugar, L., Huie, K., Herbert, A., Bernard, D., Dye, J., Kapur, Vivek, Musser, J., 2020

Convalescent plasma anti–SARS-CoV-2 spike protein ectodomain and receptor-binding domain IgG correlate with virus neutralization
Journal of Clinical Investigation, Salazar, Eric, Kuchipudi, Suresh, Cattadori, Isabella, Christensen, Paul, Eagar, Todd, Yi, Xin, Zhao, Picheng, Jin, Zhicheng, Long, S., Olsen, Randall, Chen, Jian, Castillo, Brian, Leveque, Christopher, Towers, Dalton, Lavinder, Jason, Gollihar, Jimmy, Cardona, Jose, Ippolito, Gregory, Nissly, Ruth, Bird, Ian, Greenawalt, Denver, Rossi, Randall, Gontu, Abhinay, Srinivasan, Sreenidhi, Poojary, Indira, Cattadori, I, Hudson, Peter J., Josleyn, Nicole, Prugar, Laura, Huie, Kathleen, Herbert, Andrew, Bernard, David, Dye, John, Kapur, Vivek, Musser, James, 2020

Peste des petits ruminants Virus Transmission Scaling and Husbandry Practices That Contribute to Increased Transmission Risk: An Investigation among Sheep, Goats, and Cattle in Northern Tanzania
Viruses, Herzog, Catherine, de Glanville, William, Willett, Brian, Cattadori, Isabella, Kapur, Vivek, Hudson, Peter, Buza, Joram, Swai, Emmanuel, Cleaveland, Sarah, Bjornstad, O, Bjørnstad, Ottar N., 2020

Microbial Diversity in Bushmeat Samples Recovered from the Serengeti Ecosystem in Tanzania
Scientific Reports, Katani, Robab, Schilling, Megan, Hudson, Peter, Lyimo, Beatus, Tonui, Triza, Cattadori, Isabella, Eblate, Ernest, Martin, Andimile, Estes, Anna, Buza, Teresia, Rentsch, Dennis, Davenport, Karen, Hovde, Blake, Lyimo, Samson, Munuo, Lydia, Stomeo, Francesca, Tiambo, Christian, Radzio-Basu, Jessica, Mosha, Fausta, Hudson, P, Buza, Joram, Kapur, V, 2019

Conserved, breed-dependent, and subline-dependent innate immune responses of Fayoumi and Leghorn chicken embryos to Newcastle disease virus infection
Scientific Reports, Schilling, Megan A., Memari, Sahar, Cavanaugh, Meredith, Katani, Robab, Deist, Melissa S., Radzio-Basu, Jessica, Lamont, Susan J., Buza, Joram J., Kapur, Vivek, 2019

IMAP: An integrated bioinformatics and visualization pipeline for microbiome data analysis
BMC Bioinformatics, Buza, Teresia M., Tonui, Triza, Stomeo, Francesca, Tiambo, Christian, Katani, Robab, Schilling, Megan, Lyimo, Beatus, Gwakisa, Paul, Cattadori, Isabella M., Buza, Joram, Kapur, Vivek, 2019

Innate immune genes associated with newcastle disease virus load in chick embryos from inbred and outbred lines
Frontiers in Microbiology, Schilling, M, Memari, S, Cattadori, Isabella, Katani, R, Muhairwa, A, Buza, J, Kapur, V, 2019

A defined antigen skin test for the diagnosis of bovine tuberculosis
Science advances, Srinivasan, Sreenidhi, Jones, Gareth, Veerasami, Maroudam, Steinbach, Sabine, Holder, Thomas, Zewude, Aboma, Fromsa, Abebe, Ameni, Gobena, Easterling, Laurel, Bakker, Douwe, Juleff, Nicholas, Gifford, Glen, Hewinson, R. G., Martin Vordermeier, H., Kapur, Vivek, 2019

Identification of Sero-Diagnostic Antigens for the Early Diagnosis of Johne’s Disease using MAP Protein Microarrays
Scientific Reports, Li, Lingling, Bannantine, John P., Campo, Joseph J., Randall, Arlo, Grohn, Yrjo T., Schilling, Megan A., Katani, Robab, Radzio-Basu, Jessica, Easterling, Laurel, Kapur, Vivek, 2019

Pastoral production is associated with increased peste des petits ruminants seroprevalence in northern Tanzania across sheep, goats and cattle
Journal of Hygiene, Herzog, C, de Glanville, W, Willett, B, Kibona, T, Cattadori, Isabella, Kapur, V, Hudson, P, Buza, J, Cleaveland, S, Bjørnstad, O, 2019

Complete genome sequences of Newcastle disease virus isolates from backyard chickens in northern India
Genome Announcements, Maan, Sushila, Mor, Sunil K., Jindal, Naresh, Joshi, Vinay G., Ravishankar, Chintu, Singh, Vikash K., Ravindran, Rajasekhar, Sahoo, Niranjana, Radzio-Basu, Jessica, Schilling, Megan A., McVey, Walter R., Mahajan, Nand K., Kapur, Vivek, Goyal, Sagar M., 2019

Prevalence of Bovine Tuberculosis in India: A systematic review and meta-analysis
Transboundary and Emerging Diseases, Srinivasan, Sreenidhi, Easterling, Laurel, Rimal, Bipin, Niu, Xiaoyue Maggie, Conlan, Andrew J.K., Dudas, Patrick, Kapur, Vivek, 2018

Transcriptional innate immune response of the developing chicken embryo to Newcastle disease virus infection
Frontiers in Genetics, Schilling, Megan A., Katani, Robab, Memari, Sahar, Cavanaugh, Meredith, Buza, Joram, Basu, Jessica Radzio, Mpenda, Fulgence N., Deist, Melissa S., Lamont, Susan J., Kapur, Vivek, 2018

Conditional function of autoaggregative protein Cah and common cah mutations in Shiga toxinproducing Escherichia coli
Applied and Environmental Microbiology, Carter, Michelle Qiu, Brandl, Maria T., Kudva, Indira T., Katani, Robab, Moreau, Matthew R., Kapur, Vivek, 2018

Early detection of Mycobacterium avium subsp. paratuberculosis infection in cattle with multiplex-bead based immunoassays
PLoS One, Li, Lingling, Wagner, Bettina, Freer, Heather, Schilling, Megan, Bannantine, John P., Campo, Joseph J., Katani, Robab, Grohn, Yrjo T., Radzio-Basu, Jessica, Kapur, Vivek, 2017

Identification of sero-reactive antigens for the early diagnosis of Johne’s disease in cattle
PLoS One, Li, Lingling, Bannantine, John P., Campo, Joseph J., Randall, Arlo, Grohn, Yrjo T., Katani, Robab, Schilling, Megan, Radzio-Basu, Jessica, Kapur, Vivek, 2017

Comparative genomics of two super-shedder isolates of Escherichia coli O157:H7
PLoS One, Katani, Robab, Cote, Rebecca, Kudva, Indira T., Debroy, Chitrita, Arthur, Terrance M., Kapur, Vivek, 2017

Identification of novel seroreactive antigens in Johne's disease cattle by using the Mycobacterium tuberculosis protein array
Clinical and Diagnostic Laboratory Immunology, Bannantine, John P., Campo, Joseph J., Li, Lingling, Randall, Arlo, Pablo, Jozelyn, Praul, Craig A., Garay, Juan Antonio Raygoza, Stabel, Judith R., Kapur, Vivek, 2017

High-throughput sequencing of 16S rRNA Gene Reveals Substantial Bacterial Diversity on the Municipal Dumpsite
BMC Microbiology, Mwaikono, Kilaza Samson, Maina, Solomon, Sebastian, Aswathy, Schilling, Megan, Kapur, Vivek, Gwakisa, Paul, 2016

Impact of helminth infections and nutritional constraints on the small intestine microbiota
PLoS One, Cattadori, Isabella M., Sebastian, Aswathy, Hao, Han, Katani, Robab, Albert, Istvan, Eilertson, Kirsten E., Kapur, Vivek, Pathak, Ashutosh, Mitchell, Susan, 2016

Erratum: Comparison of O-Antigen Gene Clusters of All O-Serogroups of Escherichia coli and Proposal for Adopting a New Nomenclature for O-Typing (PLoS ONE (2016) 11: 1 (e0147434) DOI:10.1371/journal.pone.0147434)
PLoS One, DebRoy, Chitrita, Fratamico, Pina M., Yan, Xianghe, Baranzoni, Gian Marco, Liu, Yanhong, Needleman, David S., Tebbs, Robert, O'Connell, Catherine D., Allred, Adam, Swimley, Michelle, Mwangi, Michael, Kapur, Vivek, Raygoza Garay, Juan A., Roberts, Elisabeth L., Katani, Robab, 2016

Rapid detection of Escherichia coli O157 and shiga toxins by lateral flow immunoassays
Toxins, Wang, Jinliang, Katani, Robab, Li, Lingling, Hegde, Narasimha, Roberts, Elisabeth L., Kapur, Vivek, DebRoy, Chitrita, 2016

Molecular epidemiology of Mycobacterium avium subsp. paratuberculosis on dairy farms
Annual Review of Animal Biosciences, Li, Lingling, Katani, Robab, Schilling, Megan, Kapur, Vivek, 2016

Complete genome sequence of SS52, a strain of Escherichia coli O157: H7 recovered from supershedder cattle
Genome Announcements, Katani, Robab, Cote, Rebecca, Garay, Juan Antonio Raygoza, Li, Lingling, Arthur, Terrance M., DebRoy, Chitrita, Mwangi, Michael M., Kapur, Vivek, 2016

Comparison of O-antigen gene clusters of all O-serogroups of Escherichia coli and proposal for adopting a new nomenclature for O-typing
PLoS One, DebRoy, Chitrita, Fratamico, Pina M., Yan, Xianghe, Baranzoni, Gian Marco, Liu, Yanhong, Needleman, David S., Tebbs, Robert, O'Connell, Catherine D., Allred, Adam, Swimley, Michelle, Mwangi, Michael, Kapur, Vivek, Raygoza Garay, Juan A., Roberts, Elisabeth L., Katani, Robab, 2016

Separating putative pathogens from background contamination with principal orthogonal decomposition: Evidence for Leptospira in the Ugandan Neonatal Septisome
Frontiers in Medicine, Schiff, Steven J., Kiwanuka, Julius, Riggio, Gina, Nguyen, Lan, Mu, Kevin, Sproul, Emily, Bazira, Joel, Mwanga-Amumpaire, Juliet, Tumusiime, Dickson, Nyesigire, Eunice, Lwanga, Nkangi, Bogale, Kaleb T., Kapur, Vivek, Broach, James R., Morton, Sarah U., Warf, Benjamin C., Poss, Mary, 2016

Whole genome sequencing of diverse Shiga toxin-producing and non-producing Escherichia coli strains reveals a variety of virulence and novel antibiotic resistance plasmids
Plasmid, Losada, Liliana, DebRoy, Chitrita, Radune, Diana, Kim, Maria, Sanka, Ravi, Brinkac, Lauren, Kariyawasam, Subhashinie, Shelton, Daniel, Fratamico, Pina M., Kapur, Vivek, Feng, Peter C.H., 2016

Comparative analysis of super-shedder strains of Escherichia coli O157:H7 reveals distinctive genomic features and a strongly aggregative adherent phenotype on bovine rectoanal junction squamous epithelial cells
PLoS One, Cote, Rebecca, Katani, Robab, Moreau, Matthew R., Kudva, Indira T., Arthur, Terrance M., DebRoy, Chitrita, Mwangi, Michael M., Albert, Istvan, Garay, Juan Antonio Raygoza, Li, Lingling, Brandl, Maria T., Carter, Michelle Q., Kapur, Vivek, 2015

Complete Genome Sequence of SS52, a Strain of Escherichia coli O157:H7 Recovered from Supershedder Cattle
Genome Announc, Katani, R., Cote, R., Raygoza Garay, J., Li, L, Arthur, T., DebRoy, C, Mwangi, M., Kapur, Vivek, 2015

Complete genome sequence of Escherichia coli strain RS218 (O18: H7: K1), associated with neonatal meningitis
Genome Announcements, Wijetunge, Dona Saumya S., Katani, Robab, Kapur, Vivek, Kariyawasama, Subhashinie, 2015